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  • Indiana University Pervasive Technology Institute
    a service and cyberinfrastructure center of the IU Pervasive Technology Institute is providing the online collaborative infrastructure to support SPARC cross institutional initiatives through the Indiana CTSI HUB and other services RT divisions providing support include the Advanced Biomedical Information Technology Core ABITC and Campus Bridging and Research Infrastructure CBRI Medicine news June 10 2014 Indiana CTSI launches consortium for collaborations in translational medicine Read the full article Ready Set Robots program seeks sponsors The program is reaching a national audience and we hope to expand the offerings so more kids will get excited about science and technology read more IU s Ready Set Robots camp makes national and local news The little robot camp that could and does is making the news all over the hoosier state and in fact the nation read more Click here for a list of recent PTI news Jul 09 Worldwide Education Outreach and Training Events Click here for a full list of events XSEDE14 eXtreme Science and Engineering Discovery Environment Conference Sun 07 13 2014 All day Fri 07 18 2014 All day Atlanta Marriott Marquis Atlanta GA US https conferences xsede org For more information visit the conference website Workshop High Performance Networking for International Climate Science Mon 07 14 2014 All day Wed 07 16 2014 All day Boulder CO http events internet2 edu 2014 ftw climate index cfm In July 2014 a Focused Technical Workshop FTW sponsored by ESnet and Internet2 co sponsored by Indiana University National Center for Atmospheric Research NCAR and National Oceanic Atmospheric Administration NOAA and hosted by NOAA brings together network experts with scientists in the domain of international climate sciences to discuss their most pressing network related issues and requirements The workshop which begins at 1 pm on Monday and concludes by 12 Noon on

    Original URL path: http://pti.iu.edu/ (2014-07-09)
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  • Online Digital Data Collections and Online Services Supported by PTI
    appliance which runs the EMI UNICORE server tools https portal futuregrid org Digital Science Center FutureGrid RAIN Bare metal and virtual machine based dynamic provisioning http futuregrid github com rain Digital Science Center Security Matters Public outreach project aimed at providing how to instructional videos focused on information security for the general public http www securitymatters iu edu CACR PTI Service and Cyberinfrastructure Centers Get SNPs using NCBI eSearch and eFetch A web service to display information about SNPs specified either by SNP ID or by a chromsome region http discern uits iu edu 8421 show SNP neighbors getSNPs eSearch eFetch new html NCGAS DroSpeGe Comparative Drosophila Species Genomes database http insects eugenes org DroSpeGe NCGAS Daphnia water flea genome Annotated Genome of Daphnia water flea https daphnia cgb indiana edu NCGAS Reference Genome Data Reference data for assemblies that use a standard sequence as a reference Derived from http www ncbi nlm nih gov RefSeq NCGAS Galaxy A web based workflow composer and manager for genomic analysis that can be used by domain scientists It supports data importing and management file transformation and analytical tools such as Trinity for RNA Seq analysis https galaxy indiana edu NCGAS Galaxy for POD Another implementation of Galaxy see above but this one uses a fee for cycles model and is available to anyone http galaxy rockhopper uits iu edu NCGAS E DECIDER E DECIDER is a science gateway that builds on tools from the QuakeSim project to support emergency planning and response for earthquake events http www e decider org Research Technologies 3D iu edu 3d iu edu was created to serve as a gateway to the variety of stereoscopic resources available to the IU community as well as a repository for download or viewing of the numerous stereoscopic materials e g videos and images that have been or will be produced by members of the IU community http 3d iu edu Research Technologies CORUS A repository of tools used by clinical researchers to collaborate with community groups https ctsacorus org Research Technologies Open Grants System A software system used to manage internal grant funding opportunities http indianactsi org grants Research Technologies HUB Data Viewer A data management application that allows research teams as multiple locations to manage and work with a shared data set online as demonstrated in the Camp Calcium online database https www indianactsi org dataview spreadsheet cca camps keyq Research Technologies DisProt Database of proteins that contain regions of intrinsic disorder or that are entirely disordered as determined by one or more of 30 different experimental methods http www disprot org Research Technologies HIP2 A repository of health human plasma protein database http bio informatics iupui edu HIP2 Research Technologies Indiana Spatial Data Portal Indiana digital aerial photos topographic maps and digital elevation data http gis iu edu Research Technologies IUScholarWorks Institutional repository for deposit of scholarly research from IU including articles conference papers working papers technical reports dissertations and data sets http scholarworks iu edu repository Research

    Original URL path: http://pti.iu.edu/research/collections-and-services.php (2014-07-09)
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  • PTI Multimedia Gallery
    Leadership PTI Organizational Chart PTI Research Centers Org Chart PTI Service CI Centers Org Chart About Mission Overview News Announcements Events Employment Opportunities Staff Resources Contact PTI Home PTI Multimedia Gallery Click on the preview image to play videos PTI Videos Selected events from the Historic Timeline of Indiana University IT Evolution for the Big Red II Dedication Ceremony View on YouTube See more PTI videos Data to Insight Videos HathiTrust Research Center Connecting People with Human Knowledge Promotional Video View on YouTube See more D2I videos Digital Science Center Videos Supported by a grant from the NSF Polar Grid is an advanced cyberinfrastructure used to support polar science research and provide educational opportunities for student scientists View on YouTube See more DSC videos Research Technologies Videos Big Red II Embracing the spirit of Indiana University View on YouTube See more RT videos Project Videos The visualization unfolds the daily location of a regional weather forecast done in support of Vortex2 field effort that took place May June 2010 For more information visit the D2I LEAD project website View on YouTube See more Project videos Education Outreach and Training Videos Indiana high school students with an interest in computer technology

    Original URL path: http://pti.iu.edu/gallery/index.php (2014-07-09)
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  • Open Source Software
    Open source system for providing online access to audio and video collections Data 2 Insight PhotoCat2 https github com iudlp photocat2 Image cataloging tool Data 2 Insight Variations 6 2 http variations sourceforge net Digital music library system update Data 2 Insight Variations FRBR Source Release http vfrbr info Experimental discovery system for music metadata Data 2 Insight Kuali OLE 0 6 http www kuali org download Open Library Environment Data 2 Insight RIS2N3 https github com dgcliff RIS2N3 Converts RIS citation format to N3 format for loading into VIVO Data 2 Insight XSP http damsl cs indiana edu projects phoebus xsp php Network library Data 2 Insight Karma http d2i indiana edu provenance karma The Karma tool is a standalone tool that can be added to existing cyberinfrastructure for purposes of collection and representation of provenance data Karma utilizes a modular architecture that permits support for multiple instrumentation plugins that make it usable in different architectural settings Data 2 Insight NetKarma http d2i indiana edu provenance netkarma NetKarma allows researchers to see the exact state of the network and store configuration of the experiment and its slice THe provenance of the data will be stored and visualized through a data portal The provenance data can be used by the researcher to analyze their data allow for the suspension and resumption of an experiment and provide a single reference to find the details and data collected in an experiment Data 2 Insight NetKarma plugin to Cytoscape http d2i indiana edu provenance netkarma Provides visualization of metadata Data 2 Insight Phoebus http damsl cs indiana edu projects phoebus Data movement service Data 2 Insight Sigiri http d2i indiana edu sigiri Sigiri Job Scheduler provides a simple abstraction for interaction with heterogeneous resource managers spanning grid and cloud computing and features that make the tool useful for the midscale physical or natural scientist Data 2 Insight XMC Cat http d2i indiana edu xmccat XMC Cat is a metadata catalog that stores rich metadata describing data objects that are themselves stored in files storage repositories or on the web Data 2 Insight Twister http www iterativemapreduce org Twister is a software tool that supports faster execution of many data mining applications implemented as MapReduce programs The tool extends the functionality of MapReduce a distributed programming technique patented by Google for large scale data processing in datacenter environments Twister allows MapReduce to achieve higher performance perform faster data transfers and reduce the time it takes to process vast sets of data for data mining and machine learning applications Digital Science Center Fault Tolerant Hybrid Information Service FTHPIS http www opengrids org hybrid index html FTHPIS is a hybrid grid information service supporting both the scalability of large amounts of relatively slowly varying data and a high performance rapidly updated information service for dynamic regions This generic implementation supports two information service implementations ExtendedUDDI and WS Context Digital Science Center mpiJava http www hpjava org mpiJava html mpiJava is an object oriented Java interface to

    Original URL path: http://pti.iu.edu/research/oss.php (2014-07-09)
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  • Scholarly Highlights
    Supporting IUB Fine Art Classes May 2014 Helping Students Create Digital Cinema Packages May 2014 Support for IUPUI Informatics Student Capstones Spring 2014 May 2014 Professor Block s Reaching Study April 2014 Mapping the Winter Olympics with Science On a Sphere April 2014 D201 3D Modeling Digital Fabrication Project VR Showcase April 2014 Whole Genome Sequencing March 2014 Leveraging the national cyberinfrastructure for biomedical research March 2014 Contributing to the Annotation of the Loblolly Pine Genome March 2014 Support for the Consortium for Top Down Proteomics March 2014 IU s IT Resources Help Uncover New Complexity in Fruit Fly March 2014 Making Art Sculptures Talk in Music March 2014 Traumatic Brain Injury Registry March 2014 Enterprise Architecture for Indiana University File Storage February 2014 The Digital Scroll Jack Kerouac s On the Road Manuscript February 2014 NCGAS assists Lamont Doherty Earth Observatory in Exploring Phytoplankton use of Nitrogen and Phosphorus February 2014 BLAST on the Open Science Grid February 2014 Blood Biomarkers for Mood Disorders February 2014 Empowering Students with new Virtual Reality VR Software December 2013 Supporting workflows towards digital fabrication for Herron students December 2013 Nanoreactors for Renewable Energy Resource Generation and Environmental Remediation December 2013 Rewriting the Laws of Physics for Nanoworld December 2013 Antiviral Nanoparticle Vaccines December 2013 Cyberinfrastructure Enables Remote Sensing of Ice Sheets December 2013 Population Genomic Theory December 2013 Exploiting HPC Resources for the 3D Time Series Analysis of Caries Lesion Activity November 2013 SPLInter Molecular Interaction Prediction Tool on the Open Science Grid November 2013 CIFASD 3D Imaging Core October 2013 A Scientific Gateway for the hydrodynamic analysis of macromolecules with UltraScan October 2013 Operation IceBridge discovers massive canyon under Greenland Ice Sheet September 2013 Discovery and Validation of Blood Biomarkers for Suicidality September 2013 Cook Medical Data On a Sphere June

    Original URL path: http://pti.iu.edu/research/scholarly-highlights/index.php (2014-07-09)
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  • PTI Sponsored and Hosted Workshops
    and Projects Impact 21st Century Workforce Bringing Distinction to the State of Indiana Economic Development Education Outreach and Training EOT Highlights Historic Timeline of Indiana University IT Evolution People Pervasive Technology Institute Leadership Digital Science Center Leadership Data to Insight Center Leadership Center for Applied Cybersecurity Research Leadership Research Technologies Leadership PTI Organizational Chart PTI Research Centers Org Chart PTI Service CI Centers Org Chart About Mission Overview News Announcements

    Original URL path: http://pti.iu.edu/workshops/index.php (2014-07-09)
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  • 21st Century Workforce
    read more RDA US Interns Program Call for applications The RDA US Interns program invites graduate students and postdoctoral scholars to apply for the 2014 Summer Internship Interns will receive a summer stipend to work on a project that has the backing of a senior member of the RDA community The deadline is April 24 2014 midnight EDT Please feel free to distribute this message to interested candidates and communities Read the full article Region Launches Unique STEM Initiative in the IUSB area An Indianapolis based science technology engineering and mathematics education organization is expanding its footprint in the state Project Lead The Way Inc is working with the Corporate Partnership for Economic Growth on a first of its kind 4 4 million pilot program The partnership will provide every school in a five county northern Indiana region access to the education group s STEM curriculum Inside Indiana Business March 3 2014 Region Launches Unique STEM Initiative Read the full article IU research and technology to support new 320 million Digital Lab for Manufacturing Pervasive Technology Institute s Geoffrey C Fox Prof School of Informatics and Computing and UITS RT Advanced Visualization Lab and IU s supercomputer Big Red II named in new award to Indiana University IU Newsroom February 26 2014 IU research and technology to support new 320 million Digital Lab for Manufacturing Read the full article Fox s big data MOOC named one of the 10 great MOOCs for techies by Computerworld The MOOC investigates the use of clouds running data analytics collaboratively for processing big data This free MOOC is extended and offered for credit as part of the School s affordable online program in data science SoIC January 16 2014 Fox s big data MOOC named one of the 10 great MOOCs for techies by

    Original URL path: http://pti.iu.edu/impact/21C/index.php (2014-07-09)
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  • Bringing Distinction to the State of Indiana
    Timeline of Indiana University IT Evolution People Pervasive Technology Institute Leadership Digital Science Center Leadership Data to Insight Center Leadership Center for Applied Cybersecurity Research Leadership Research Technologies Leadership PTI Organizational Chart PTI Research Centers Org Chart PTI Service CI Centers Org Chart About Mission Overview News Announcements Events Employment Opportunities Staff Resources Contact PTI Home Bringing distinction to the state of Indiana As a world class organization PTI brings

    Original URL path: http://pti.iu.edu/impact/disctinction.php (2014-07-09)
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