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  • new genetic analysis software (2003)
    SIBLINK multi point IBD analysis SIMLA simulation for linkage and association studies 10 07 03 UNPHASED association analysis of haplotypes from unphased genotype data GSMA genome scan meta analysis L POP detect population stratification PL EM partition ligation EM algorithm for haplotype reconstruction for SNPs EM DECODER Bayesian haplotype reconstruction for SNPs 09 23 03 EHP R estimation of haplotype frequencies for pooled DNA samples 09 23 03 EMLD calculation of LD for SNP data using EM algorithm 09 18 03 ASPEX has a new website http aspex sourceforge net 09 16 03 HELIXTREE complex genotype software 09 02 03 FASTER family smart eliminator PHASE version2 is released 08 29 03 ADMIXMAP admixture mapping 05 22 03 GENEFINDER multipoint IBD analysis that provides confidence intervals 05 14 03 CHECKHET detect genetic outliers in case control samples STRUCTURE investigate population structure by multi locus genotype STRAT a companion program to STRUCTURE for use in association mapping enabling valid case control studies even in the presence of population structure 04 28 03 MMDRAWER drawing chromosome map from MAPMAKER EXP s output SNP ASSISTANT 04 07 03 RC TDT SAS macro to calculate reconstruction combined TDT TDTPOWER SAS macro for power calculation in

    Original URL path: http://linkage.rockefeller.edu/soft/new03.html (2012-11-26)
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  • new genetic analysis software (2002)
    and sample size calculators for TDT and ASP tests 06 11 02 PSEUDOMARKER using pseudomarker for jointly linkage and LD analysis 06 11 02 MAPCHART from the authors of JOINMAP and MAPQTL which are also upgraded 05 24 02 HAPLORE and HAPLOTYPER reconstruct haplotype 05 23 02 MRH minimum recombinant haplotype 05 14 02 SNPHAP estimating frequencies of SNP haplotypes new webpage for David Clayton s programs http www gene

    Original URL path: http://linkage.rockefeller.edu/soft/new02.html (2012-11-26)
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  • new genetic analysis software (2001)
    01 GASSOC is upgraded from 1 04 to 1 06 05 31 01 the home for MULTIMAP CRI MAP PVM LNKTOCRI and a distribution site for CRIMAP has been moved to http compgen rutgers edu multimap 05 31 01 GENEHUNTER is upgraded from 2 0 to 2 1 05 24 01 GRR graphical representation of relationships 03 12 01 Dave Curtis software page has been moved from http www gene

    Original URL path: http://linkage.rockefeller.edu/soft/new01.html (2012-11-26)
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  • new genetic analysis software (2000)
    14 00 HAPPY a software package for multipoint QTL mapping in genetically heterogeneous animals 06 07 00 GENEHUNTER IMPRINTING modification of GENEHUNTER to allow imprinted genes GENEHUNTER TWOLOCUS modification of GENEHUNTER to allow two locus models 05 24 00 GOLD graphical overview of linkage disequilibrium 03 23 00 COMBIN construction of ultra dense linkage maps 03 14 00 HAL is renamed TRIMHAP 03 13 00 PED a pedigree drawing program

    Original URL path: http://linkage.rockefeller.edu/soft/new00.html (2012-11-26)
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  • new genetic analysis software (1999)
    html 11 10 99 GIBBS and SIBSHIPS are removed from the list The first was replaced by MORGAN and the second by BOREL under the package collection PANGAEA at http www stat washington edu thompson Genepi pangaea shtml 11 01 99 PROGENY a new version is released on Nov 1 1999 10 21 99 ALLEGRO multipoint linkage program developed at DECODE 10 04 99 SPERMSEG segregation analysis of single sperm data 09 22 99 MEGA2 a data handling program for facilitating genetic linkage and association analyses AUTOSCAN a helper program to automate the tedious process of the creation of input files from genotype data of genome wide scans 08 05 99 PEDHUNTER creation and verification of pedigrees within large genealogies FASTLINK has a new web page http www ncbi nlm nih gov CBBresearch Schaffer fastlink html CASPAR has a new web page http www ncbi nlm nih gov CBBresearch Schaffer caspar html 07 12 99 XDT multiallelic sibship TDT 07 04 99 FASTLINK is upgraded from 4 0P to 4 1P 06 22 99 TDT S TDT TDT and sib TDT 06 21 99 GGT graphical geno typing 06 17 99 POLYMORPHISM 05 25 99 HAL haplotype algorithm 05 18

    Original URL path: http://linkage.rockefeller.edu/soft/new99.html (2012-11-26)
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  • new genetic analysis software (1998)
    pairs using an extension of the GENEHUNTER program PEDCHECK was upgraded 11 20 98 PDPSYS was upgraded from test version to 1 0 11 11 98 TRANSMIT was upgraded from 2 1 to 2 3 11 04 98 GENEHUNTER was upgraded to 2 0 with a new FTP site at http waldo wi mit edu ftp distribution software genehunter gh2 the documentation in PDF and in html online is also available 11 02 98 PEDPLOT pedigree drawing program for UNIX computers GSCAN web interface for semiparametric linkage and linkage disequilibrium analysis of general pedigrees NOTE GSCAN is retired 10 05 98 ALLASS and BETA non parametric linkage and association mapping of disease genes programs by A Collins and N E Morton see also the online manual page 9 23 98 PGR parental genotype reconstruction NOTE PGR is retired 8 12 98 ARLEQUIN a software for population genetics analysis 8 05 98 PEDJAVA pedigree entry and retrieval from a web browser into a Microsoft ACCESS database 4 27 98 LINKBASE s web page is added URL http www ktl fi molbio linkbase 2 04 98 TRANSMIT testing association 2 04 98 LOKI quantitative trait determined by multiple loci New FTP site

    Original URL path: http://linkage.rockefeller.edu/soft/new98.html (2012-11-26)
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  • new genetic analysis software (1997)
    pairs 10 15 97 updated infomation for FASTLINK 09 21 97 the web page for PROGENY is http www progeny2000 com 09 17 97 documentation for GENEHUNTER is added 07 16 97 documentation for SIMULATE is added 07 15 97 DMAP disequilibrium mapping 07 10 97 NOCOM estimate parameters for mixture of normal distributions version Aug 1992 User s guide at http linkage rockefeller edu ott NOCOM htm 06 20 97 gCONVERT converting formats for different programs NOTE GCONVERT is now retired SIB PAIR several non parametric analysis 06 14 97 ACT analysis of complex traits which replaces MAGE MAGE is now retired from the list 05 29 97 PANGAEA pedigree analysis for genetics and epidemiology attributes consists of BOREL HARDY MORGAN and PEDPACK from E A Thompson s group 05 17 97 LINKBASE a window based database system designed to manage genetic data 05 14 97 GAP genetic analysis package from Epicenter Software 05 02 97 TWOLOC analyzing two locus susceptibility gene models in affected sib pair data 04 30 97 DMS a database management system for use with positional mapping projects NOTE DMS is now retired FAST MAP Fluorescent Allele calling Software Toolkit Microsatellite Automation Package s home

    Original URL path: http://linkage.rockefeller.edu/soft/new97.html (2012-11-26)
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  • new genetic analysis software (1996)
    moved from http chimera gene cwru edu multimap html to http linkage rockefeller edu multimap and the FTP site has been moved from ftp chimera gene cwru edu pub multimap to ftp linkage rockefeller edu multimap 08 27 96 PROGENY pedigree drawing and relational database for health care professionals serving families with inherited illness 08 13 96 peddraw and pedsys s new FTP site ftp www sfbr org pub pedmgt and new web page http www sfbr org online special software pedmgt html 08 08 96 typenext and varyphen are now available from our FTP site ftp linkage rockefeller edu software typenext and ftp linkage rockefeller edu software varyphen 06 17 96 map manager has a new web page http mcbio med buffalo edu mapmgr html and a FTP site ftp mcbio med buffalo edu pub MapMgr 05 22 96 genehunter 04 08 96 gibbs sibships another version of pedpack all distributed from ftp evolution genetics washington edu pub thompson see http www stat washington edu thompson eat software html for a description 03 21 96 loh linkage 03 18 96 simibd and its README file 03 04 96 A new version 2 0 of MAPMAKER SIBS is available Here

    Original URL path: http://linkage.rockefeller.edu/soft/new96.html (2012-11-26)
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