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  • microarray data
    nih gov geo Huge Gene Expression Index hugeindex org from Harvard Institute of Medicine http www hugeindex org ONCOMINE Cancer Profiling Database http www oncomine org SMD Stanford Microarray Database http genome www5 stanford edu YMD Yale Microarray Database http www med yale edu microarray microarray data individual institute lab Univ of California at San Francisco DeRisi Lab http derisilab ucsf edu publicdata html Lawrence Berkeley Lab Eisen Lab http

    Original URL path: http://linkage.rockefeller.edu/microarray/data.html (2012-11-26)
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  • discussion group/mailing list
    1999 1998 1997 1996 1995 1994 1993 core facilities data mailing programs free analysis groups labs companies short courses lists mirror copy Copyright 1999 2012 Wentian Li of North Shore LIJ Research Institute http www nslij genetics org microarray discussion group and mailing list GENE ARRAYS ITSSRV1 UCSF EDU archive at Korea by Sangsoo Kim http bfx kribb re kr gene array GENE ARRAYS ITSSRV1 UCSF EDU archive at Virginia

    Original URL path: http://linkage.rockefeller.edu/microarray/discuss.html (2012-11-26)
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  • public domain ("free") programs for microarray data analysis
    RINGO RINTACT RLMM RMAGEML RMAGPIE RMAT RNAITHER ROC RPSIXML RREDLAND RSBML RTRACKLAYER RTREEMIX RUUID RWEBSERVICES SAFE SAGENHAFT SAGX SBMLR SCISI SEQLOGO SIGGENES SIGPATHWAY SIM SIMPLEAFFY SIMULATORAPMS SIZEPOWER SLGI SLQPCR SMAP SNAPCGH SNPCHIP SNPMATRIX SPIA SPIKELI SPKTOOLS SPLICEGEAR SPLOTS SPOTSEGMENTATION SSCORE SSIZE SSPA STAM STEPNORM TARGETSEARCH TILINGARRAY TIMECOURSE TKWIDGETS TOPGO TSPAIR TWILIGHT TYPEINFO VANILLAICE VBMP VSN WEAVER WEBBIOC WIDGETTOOLS XCMS XDE XMAPBRIDGE XPS YAQCAFFY public domain programs AFM Array File Maker from Samuel Lunenfeld Research Institute Mount Sinai Hospital Toronto http www mshri on ca tyers software html AMADA Analyzing Microarray Data from Univ of Hong Kong http web hku hk xxia software AMADA htm ANOVA programs for microarray data from Churchill s group at Jackson Lab http www jax org research churchill software anova index html ANOVARRAY SAS macros http www mig jouy inra fr stat AnovArray AROMA AFFYMETRIX AROMA CN AROMA AFFYMETRIX AROMA CN http www aroma project org http www aroma project org BABELOMICS from Centro de Investigacion Principe Felipe Spain http www babelomics org CHIPINFO retrieving annotation information from NetAffx and Gene Ontology from Wong s lab at Harvard Univ http biosun1 harvard edu complab chipinfo CLUSFAVOR CLUSter and Factor Analysis using Varimax Orthogonal Rotation from Baylor http mbcr bcm tmc edu genepi CLUSTER TREEVIEW from Eisen s lab at Lawrence Berkeley National Lab http rana lbl gov EisenSoftware htm also http www microarrays org software html CYBER T web interface for t test regularized t test etc http visitor ics uci edu genex cybert CYTOSCAPE visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data http www cytoscape org D CHIP specifically for Affymetrix chip data from Wong s lab at Biostatistics Department Harvard University http www dchip org DNC MIX models the distribution of the gene expression profile as a mixture from Lin s group at Ohio State University http www stat ohio state edu statgen SOFTWARE DNC MIX GENE WORK IBM Research http www research ibm com FunGen NewFiles FGDownloads htm GENE CLUSTER Whitehead Institute registration is required A commercial version of this program is also developed at Affymetrix http www genome wi mit edu MPR software html GENE PATTERN Broad Institute http www broad mit edu cancer software genepattern GEDA gene expression data analysis Univ Pittsburg http bioinformatics upmc edu GE2 GEDA html GEDS gene expression data simulator Univ Pittsburg http bioinformatics upmc edu GE2 index html GENEVIZ Contentsoft AG Germany http www contentsoft de index htm geneviz htm GEPAS gene expression pattern analysis suite from Centro de Investigacion Principe Felipe Spain http www gepas org GOSURFER Wong s lab at Harvard Univ http biosun1 harvard edu complab gosurfer J EXPRESS Univ of Bergen Norway http www ii uib no bjarted jexpress index html MAANOVA Jaclson Lab http www jax org staff churchill labsite software anova index html ONTO EXPRESS Wayne Univ http vortex cs wayne edu Projects html PAGE PAtterns from Gene Expression from U Penn http www cbil upenn edu PaGE PLAID from Owen s

    Original URL path: http://linkage.rockefeller.edu/microarray/soft.html (2012-11-26)
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  • data analysis groups
    Univ Gary Churchill The Jackson Lab Jean Michel Claverie Stephane Audic CNRS Institut de Biologie Structurale et Microbiologie Marseilles France Susmita Datta Georgia State Joaquin Dopazo CIPF Spain Edward Dougherty Texas A M Sorin Draghici Computer Science Wayne State Univ Sandrine Dudoit UC Berkeley Michael Eisen Lawrence Berkeley National Lab Nir Friedman Computer Science and Engineering Hebrew Univ Israel Debashis Ghosh Biostatistics Univ Michigan Hopkins Expressionists a virtual group of people at Johns Hopkins Univ Trey Ideker Dept Bioengineering UCSD Christina Kendzioski Biostatistics Univ of Wisconsin Eric Lander Pablo Tamayo Broad Institute MIT Cheng Li Harvard Wentian Li North Shore LIJ Michael Newton Dept Statistics Biostatistics Medical Informatics Univ Wisconsin Wei Pen Dept Biostatistics Univ Minnesota Giovanni Parmigiani Cancer Center Johns Hopkins Univ John Quackenbush The Institute for Genomic Research TIGR Markus Ringner Physics Complex Systems Lund University Sweden David Rocke Center for Image Processing Univ California at Davis Walter Ruzzo Computer Science and Engineering Univ Washington Mark Segal Dept Epidemiology and Biostatistics Univ California at San Francisco Gavin Sherlock Dept Genetics Stanford Univ Richard Simon Biometric Research Branch National Cancer Institute NIH Terry Speed Dept Statistics Univ California at Berkeley Rainer Spang Max Planck Institute for Molecular Genetics berlin

    Original URL path: http://linkage.rockefeller.edu/microarray/analy.html (2012-11-26)
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  • list of microarray labs (academic)
    Institute http www nslij genetics org microarray labs academic these labs involve more science or technology development than a typical core facility Children s National Medical Center Geroge Washington Univ http microarray cnmcresearch org microarray html Harvard Univ George Church s lab http arep med harvard edu The Institute for Genomic Research TIGR program for genomic application http pga tigr org Institute for Systems Biology Leroy Hood s institute http

    Original URL path: http://linkage.rockefeller.edu/microarray/lab.html (2012-11-26)
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  • companies with microarray products
    City CA USA http www axon com product names GenePix see http www axon com GN Genomics html BioDiscovery Los Angeles CA USA http www biodiscovery com product names http www biodiscovery com products products html product names ImaGene BioSieve San Jose CA USA http www biosieve com product name ExpressionSieve see http www biosieve com product html Clondiag Jena Germany http www clondiag com product name IconoClust Image Software Corning USA http www corning com cmt product names CMT stock symbol GLW CytoGenomics St Louis MO USA http www silicocyte com product name SilioCyte GeneData AG Basel Switzeland http www genedata com product names GD Expressionist see http www genedata com products expressionist Gene Logic Gaithersburg MD USA http www genelogic com stock symbol GLGC Gene Network Sciences Ithaca NY USA http www gnsbiotech com product name BioMine see http www gnsbiotech com biomine shtml GeneSifter Seattle WA USA http www genesifter net product name GeneSifter lab edition core edition jumpstart Genomic Solutions Ann Arbor MI USA http www genomicsolutions com product name GeneTAC stock symbol GNSL Genotypic Technology Bangolore India http www genotypictech com Illumina San Diego CA USA http www illumina com product names BeadArray stock symbol ILMN Imaging Research Inc St Catharines Ontario Canada http imaging brocku ca product names ArrayVision product names ArrayStat Incyte Palo Alto CA USA http www incyte com product names LifeArray see http www incyte com reagents lifearray index shtml product names LifeExpression see http www incyte com expression index shtml stock symbol INCY LION bioscience AG Heidelberg Germany http www lionbioscience com MolecularWare Cambridge MA USA http www molecularware com NuGEN Technologies San Carlos CA USA http www nugeninc com Oxford Gene Technology Oxford UK http www ogt co uk Packard BioChip a wholly owned subsidiary of Packard BioScience Company

    Original URL path: http://linkage.rockefeller.edu/microarray/company.html (2012-11-26)
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  • microarray courses
    June 1 2007 Turku Centre for Biotechnology Finland http bioinformatics btk fi index php id 1384 GeneSpring GX Microarray Data Analysis Level I Level II Level III May 23 24 2007 University of Edinburgh Scotland UK http www chem agilent com scripts generic asp lpage 34709 indcol N prodcol Y Business Opportunities and Strategies for Microarrays May 14 2007 pre conference Advances in Microarray Technology Conference course Edinburgh Scotland UK http www selectbiosciences com conferences Bodovitz CourseMay07 index aspx Applications of Microarrays May 14 2007 pre Advances in Microarray Technology Conference course Edinburgh Scotland UK http www selectbiosciences com conferences dufva CourseMay07 index aspx Practical DNA Microarray Analysis May 7 10 2007 University Clinic Regensburg Germany http compdiag molgen mpg de ngfn pma2007may php GeneSpring GX Microarray Data Analysis Level I Level II Level III April 25 26 2007 Agilent Technologies Andover MA USA http www chem agilent com scripts generic asp lpage 34709 indcol N prodcol Y Microarrays Gene Expression and Regulation April 15 24 2007 Wellcome Trust Genome Campus Hinxton Cambridge UK http www wellcome ac uk doc WTX026218 html Statistical Analysis of Microarray Data with R April 13 May 18 2007 online through statistics com http www statistics com courses microarray Analysis of microarray gene expression data April 10 12 2007 Erasmus medical Centre Rotterdam The Netherlands http www medgencentre nl GeneSpring Training Courses GeneSpring GT CGH Analytics and GeneSpring GX April 10 12 2007 Washington D C USA http www chem agilent com scripts generic asp lpage 34709 indcol N prodcol Y Advanced R Programming and Bioconductor March 30 April 1 2007 Wellcome Trust Genome Campus Cambridge UK http www wellcome ac uk doc WTX035299 html Statistical Microarray Analysis Using R March 29 30 2007 Statistical Advisory Service Imperial College London UK http www3 imperial ac uk stathelp courses statisticalmicroarrayanalysisusingr Practical DNA Microarray Analysis March 5 8 2007 Institut fur Pharmazie und Molekulare Biotechnologie Heidelberg Germany http compdiag molgen mpg de ngfn pma2007mar php Microarray Data Analysis February 19 21 2007 Department of Genetics University of Cambridge UK http www bio cam ac uk gradschool current courses gepas html Training course on microarray February 12 16 2007 Ecole Normale Superieure France http www transcriptome ens fr sgdb contact training php http www transcriptome ens fr sgdb contact 20070212 inserm php Statistical Microarray Analysis Using R January 15 16 2007 Statistical Advisory Service Imperial College London UK http www3 imperial ac uk stathelp courses statisticalmicroarrayanalysisusingr BioConductor Advanced Course January 10 12 2007 Seattle USA http www bioconductor org workshops 2007 biocadv Master in Genetic Training session on microarray January 8 12 2007 Universite Paris VII France http www transcriptome ens fr sgdb contact training php http www transcriptome ens fr sgdb contact 20070108 ens php DNA Microarray Analysis January 2007 Center for Biological Sequence Analysis Technical University of Denmark Denmark http www cbs dtu dk chipcourse index php 2006 SPGF Master Training session on microarray November 27 December 1 2006 Universite Paris VII France http www transcriptome ens fr sgdb contact training php http www transcriptome ens fr sgdb contact 20061127 ens php Practical DNA Microarray Analysis November 27 30 2006 German Cancer Research Center Heidelberg Germany http compdiag molgen mpg de ngfn pma2006nov php Analysis of Microarray Expression Data with special emphasis on applications to infection biology November 14 19 2006 BMC Uppsala Universitet Sweden http www medsci uu se klinfarm arrayplatform R BioConductor Introduction Course October 2006 Seattle USA http www bioconductor org workshops 2006 biocintro oct Practical DNA Microarray Analysis September 25 28 2006 Max Planck Institut für Informatik Saarbrücken Germany http compdiag molgen mpg de ngfn pma2006sep shtml 1 Array Technologies for Pathogen Detection 2 Using Classical Statistics Experiment Design Reduce Noise in Your Next Microarray Experiment 3 Taking Multivariate Statistical Methods of the Black Box 4 Advanced Methods for Microarray Analysis August 23 2006 pre conference Microarray Data Analysis and Interpretation course Washington D C USA http www healthtech com 2006 mda sc asp Second Plant Microarray Short Course on Design and Analysis of Plant Microarray Experimentation August 2 4 2006 Department of Biostatistics University of Alabama at Birmingham USA http www soph uab edu ssg default aspx id 40 Bioconductor Training July 13 15 2006 Boston USA http www biostat harvard edu carey bos05formal html Computational and Statistical Aspects of Microarray Analysis June 18 23 2006 Bressanone Brixen Italy http www economia unimi it projects marray 2006 Microarray Laboratory Training Workshop II May 29 June 2 2006 University of Pretoria South Africa http microarray up ac za 2006 microarray training index php Microarray Bioinformatics May 8 12 2006 Continuing Professional Development University of Oxford UK http www conted ox ac uk cpd biosciences courses short courses microarray asp Practical DNA Microarray Analysis May 8 11 2006 Munich Germany http compdiag molgen mpg de ngfn pma2006may shtml Microarray Analysis May 2006 Whitehead Institute Boston USA http jura wi mit edu bio education bioinfo2006 arrays R BioConductor Introduction Course April 2006 Seattle USA http www bioconductor org workshops 2006 biocintro april FEBS Course on Human and Microbial Genomics DNA Arrays applied to Human Pathogens Diseases March 20 April 7 2006 Athens Greece http www pasteur international org enseignement Athens genomics3 html GeneSpring Basic Introductory Training Course March 17 2006 Natural Environment Research Council Training Course Birmingham UK http envgen nox ac uk envgen training archives 000562 html Practical DNA Microarray Analysis February 27 March 2 2006 Max Planck Institute for Molecular Genetics Berlin Germany http compdiag molgen mpg de ngfn pma2006feb shtml Training course on microarray February 6 10 2006 INSERM France http www transcriptome ens fr sgdb contact training php Master in Genetic Training session on microarray January 9 13 2006 Universite Paris VII France http www transcriptome ens fr sgdb contact training php http www transcriptome ens fr sgdb contact 20060109 ens php 2005 SPGF Master Training session on microarray December 12 16 2005 Universite Paris VII France http www transcriptome ens fr sgdb contact training php http www transcriptome ens

    Original URL path: http://linkage.rockefeller.edu/microarray/shortcourses.html (2012-11-26)
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  • list to microarray lists
    2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 core facilities data mailing programs free analysis groups labs companies short courses lists mirror copy Copyright 1999 2012 Wentian Li of North Shore LIJ Research Institute http www nslij genetics org microarray microarray resource lists http www biologie ens fr en genetiqu puces links html from ENS Ecole Normale Superieure France http www gene chips com maintained by

    Original URL path: http://linkage.rockefeller.edu/microarray/list.html (2012-11-26)
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