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  • slash - Wish List - example
    png gif pdf zip mpg mpeg avi mov wmv asf asx ra rm txt rtf doc xsl html js wav mp3 eps ppt pps swf tar tex gz slash Tools Support Discover About Help Search Search Wish List example Add a Wish Help us improve slash by submitting your ideas Search for Wishes Search Feedback Submitter Date All Active Accepted Rejected Granted Accepted 0 0 of 0 There are currently

    Original URL path: http://longbeach.crbs.ucsd.edu/wishlist/general/1?filterby=accepted&sortby=date&tags= (2016-02-17)
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  • slash - Wish List - example
    zip mpg mpeg avi mov wmv asf asx ra rm txt rtf doc xsl html js wav mp3 eps ppt pps swf tar tex gz slash Tools Support Discover About Help Search Search Wish List example Add a Wish Help us improve slash by submitting your ideas Search for Wishes Search Feedback Submitter Date All Active Accepted Rejected Granted Rejected 0 0 of 0 There are currently no wishes on

    Original URL path: http://longbeach.crbs.ucsd.edu/wishlist/general/1?filterby=rejected&sortby=date&tags= (2016-02-17)
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  • slash - Wish List - example
    avi mov wmv asf asx ra rm txt rtf doc xsl html js wav mp3 eps ppt pps swf tar tex gz slash Tools Support Discover About Help Search Search Wish List example Add a Wish Help us improve slash by submitting your ideas Search for Wishes Search Feedback Submitter Date All Active Accepted Rejected Granted Granted 0 0 of 0 There are currently no wishes on this list based

    Original URL path: http://longbeach.crbs.ucsd.edu/wishlist/general/1?filterby=granted&sortby=date&tags= (2016-02-17)
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  • slash - Wish List - example
    gif pdf zip mpg mpeg avi mov wmv asf asx ra rm txt rtf doc xsl html js wav mp3 eps ppt pps swf tar tex gz slash Tools Support Discover About Help Search Search Wish List example Add a Wish Help us improve slash by submitting your ideas Search for Wishes Search Feedback Submitter Date All Active Accepted Rejected Granted All 0 0 of 0 There are currently no

    Original URL path: http://longbeach.crbs.ucsd.edu/wishlist/general/1 (2016-02-17)
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  • slash - Cytoseg
    wmv asf asx ra rm txt rtf doc xsl html js wav mp3 eps ppt pps swf tar tex gz slash Tools Support Discover About Help Search Search Cytoseg Cytoseg is a command line tool for automatic segmentation of blob like structures in 3D biological datasets with emphasis on 3D electron microscopy Cytoseg website with the installation guide usage instructions and source code Example of Cytoseg output for mitochondria detection

    Original URL path: http://longbeach.crbs.ucsd.edu/tools/19-download-tools/37-cytoseg (2016-02-17)
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  • slash - IMOD Plugins
    best known and most used programs for tomographic reconstruction with well over two hundred sites using it and the reason for this popularity is because it offers several big advantages a it s free and open source b it works on any platform c it s been around for a long time and offers e mail support d it s designed specifically with 3D electron tomography in mind although can be used for light microscope too e it handles the whole electron tomography process f it s quite large and versatile although to appreciate it s power this you first have to understand and master some of it s numerous command line programs Unlike most tools IMOD includes tools for the whole tomography process including reconstruction taking tilt series tracking fiducials making tomograms stitching tomograms segmentation either tracing by hand or using one of IMODs built in basic filtering or edge detection algorithms meshing a pretty trivial step once all the contours are drawn and analysis outputting surface areas numbers volumes and measure distances between compartments if you know how of 3D electron topographic datasets IMOD also has several tools for image processing and filtering however generally speaking more sophisticated algorithms like 3D watershed have not yet been added directly into IMOD and we re hoping they will be For versatility and speed of manual segmentation IMOD is hard to beat It also has an interface for adding plugins and so we have added several tools here to help expedite segmentation Keep in mind however that IMOD like ImageJ and other powerful imaging programs has a sizable learning curve and isn t designed for collaborative segmentation and or viewing datasets over the internet for this we recommend a tool like WIB Imod reads MRC Image files and TIFF and the

    Original URL path: http://longbeach.crbs.ucsd.edu/tools/19-download-tools/39-imod-plugins (2016-02-17)
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  • slash - Tracing Tubes in IMOD
    doc xsl html js wav mp3 eps ppt pps swf tar tex gz slash Tools Support Discover About Help Search Search Tracing Tubes in IMOD About In cases where your compartments are tube like microtubules or even mitochondria the 3dmod interface allows you to quickly draw though the middle with same or different sized spheres which get rendered into a tube Pros Is much faster than tracing closed contours Download

    Original URL path: http://longbeach.crbs.ucsd.edu/tools/22-download-tools/expert-segmentation/45-tracing-tubes-in-imod (2016-02-17)
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  • slash - Bead Helper Plugin
    Although different from volume segmentation the act of tracing small dark fiducial particles represents it s own segmentation challenge and thus this page was included for completeness This plugin is designed to assist in the speedy refinement of fiducial models allowing the user to quickly identify and correct bad points BeadHelper is designed to compliment the functionality of Bead Fixer by providing useful visual aids and tools which can be used to rapidly rectify or delete bad contours i e contours where the fiducial marker has tracked poorly If tracking goes well you probably won t need Bead Helper but in situations where tracking proves problematic Bead Helper has many tools which may be able to help These are best seen and summarized in the videos on the left Instructions to Install The drawing tools plugin was added to standard release of IMOD in version 3 13 on the 1 23 2008 To install Go to the IMOD download page download the appropriate version for your computer Follow the IMOD guide instructions to install On most operating systems you can simply open a terminal window and run sudo csh f imod 4 1 2 osx intel csh Start 3dmod The

    Original URL path: http://longbeach.crbs.ucsd.edu/tools/20-download-tools/imod-plugins/38-bead-helper-plugin (2016-02-17)
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