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  • Genome Evolution Laboratory - Home
    that includes the much studied human and animal pathogens Escherichia coli Salmonella and Yersinia as well as the lesser appreciated pathogens of plants Erwinia Pectobacterium Dickeya and Pantoea plus members with various other symbiotic and free living lifestyles The research projects section of this site describes our ongoing efforts to describe the rates and patterns of genome scale molecular evolution and relate these changes to organismal evolution The software section

    Original URL path: http://asap.ahabs.wisc.edu/ (2014-10-20)
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  • Genome Evolution Laboratory - Contact
    Home Contact Us Contact Us Contacts Contact Details for this website Name Position Phone Fax Dr Nicole Perna Principal Investigator 608 890 0171 Dr Venkatesh Balakrishnan Staff Scientist 608 890 0172 Dr David Baumler Staff Scientist 608 320 4171 Dr Jeremy Glasner Staff Scientist 608 890 0171 Dr Eric Neeno Eckwall Staff Scientist 608 890 0169 Dr Guy Plunkett III Staff Scientist 608 890 0169 608 262 2976 Jennifer Apodaca

    Original URL path: http://asap.ahabs.wisc.edu/contact.html (2014-10-20)
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  • Genome Evolution Laboratory - News
    0 Progressive Mauve has been released Read more Main Menu Home News Links Contact Us Search Research Projects Software Genetics 875 Home News Latest News ASAP 1 4 1 Mauve 2 0 Released Website update Back 2014 Genome Evolution Laboratory

    Original URL path: http://asap.ahabs.wisc.edu/news/latest/ (2014-10-20)
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  • Genome Evolution Laboratory - Web Links
    trouble finding something send email to This email address is being protected from spam bots you need Javascript enabled to view it Main Menu Home News Links Contact Us Search Research Projects Software Genetics 875 Home Links Links We are regularly out on the web When we find a great site we list it here for you to enjoy From the list below choose one of our weblink topics then

    Original URL path: http://asap.ahabs.wisc.edu/links/ (2014-10-20)
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  • Genome Evolution Laboratory - ASAP 1.4.1
    Research Projects Software Genetics 875 Home News ASAP 1 4 1 ASAP 1 4 1 ASAP 1 4 1 released May 11 2007 This release adds several new features and a number of bug fixes This is slightly updated from version 1 4 0 in use on the ASAP live site and significantly updated from version 1 3 0 in use in ERIC See the ASAP page for more information

    Original URL path: http://asap.ahabs.wisc.edu/news/latest/asap-1.4.1.html (2014-10-20)
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  • Genome Evolution Laboratory - Search
    been released Read more Main Menu Home News Links Contact Us Search Research Projects Software Genetics 875 Home Search Search Search Keyword Any words All words Exact phrase Ordering Newest first Oldest first Most popular Alphabetical Section Category Back 2014

    Original URL path: http://asap.ahabs.wisc.edu/component/option,com_search/Itemid,5/ (2014-10-20)
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  • Genome Evolution Laboratory - Research Projects
    Projects Research Projects GEL personnel and collaborators are currently engaged in a variety of research projects Here we focus on describing our research interests and many of the projects described span multiple funding sources The funding section of this site contains more information about the objectives and attribution for individual grants If you don t see what you are looking for here let us know paul genome wisc edu Genome Projects We are engaged in multiple projects aimed at increasing the number and diversity genome sequences from enterobacteria These include plant pathogenic enterobacteria which remain underrepresented among complete genomes available as well as neglected genera isolated from a wide variety of sources Software and Database Development We have built several tools to assist with annotation and comparative analysis of genome data These include Mauve a widely used multiple genome aligner and the ASAP database The Software section of this web site includes additional information about using and downloading these tools To logon to our installation of ASAP to browse and retrieve genome data use this link Enter ASAP now Organismal and Genome Evolution We use genome sequences and tools built here and elsewhere to try to understand the evolutionary history

    Original URL path: http://asap.ahabs.wisc.edu/research.html (2014-10-20)
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  • Genome Evolution Laboratory - Software
    through genetic and biochemical characterization providing a vehicle for ongoing updates of the annotation and a repository for genome scale experimental data Development was motivated by the need to more directly involve a greater community of researchers with their collective expertise in keeping the genome annotation current and to provide a synergistic link between up to date annotation and functional genomic data Mauve Multiple Genome Alignment Mauve is a system for efficiently constructing multiple genome alignments in the presence of large scale evolutionary events such as rearrangement and inversion Multiple genome alignment provides a basis for research into comparative genomics and the study of evolutionary dynamics on a new scale Aligning whole genomes is a fundamentally different problem than aligning short sequences Mauve has been developed with the idea that a multiple genome aligner should require only modest computational resources It employs algorithmic techniques that scale well in the amount of sequence being aligned For example a pair of Y pestis genomes can be aligned in under a minute while a group of 9 divergent Enterobacterial genomes can be aligned in a few hours GRIL Genome Inversion and Rearrangement Locator GRIL is a tool that can be used to identify

    Original URL path: http://asap.ahabs.wisc.edu/software/ (2014-10-20)
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